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1

How to Untie a Protein Knot

Yin, Sitao, Dhital, Brittiny, Hou, Ya-Ming

Journal:

Year:

2019

Language:

english

File:

PDF, 660 KB

english, 2019

2

Mg 2+ -Dependent Methyl Transfer by a Knotted Protein: A Molecular Dynamics Simulation and Quantum Mechanics Study

Perlinska, Agata, Kalek, Marcin, Christian, Thomas, Hou, Ya-Ming, Sulkowska, Joanna Ida

Journal:

Year:

2020

File:

PDF, 21.13 MB

2020

3

Structural and Mechanistic Basis for Enhanced Translational Efficiency by 2-Thiouridine at the tRNA Anticodon Wobble Position

Rodriguez-Hernandez, Annia, Spears, Jessica L., Gaston, Kirk W., Limbach, Patrick A., Gamper, Howard, Hou, Ya-Ming, Kaiser, Rob, Agris, Paul F., Perona, John J.

Journal:

Journal of Molecular Biology

Year:

2013

Language:

english

File:

PDF, 2.80 MB

english, 2013

4

Maintenance of protein synthesis reading frame by EF-P and m1G37-tRNA

Gamper, Howard B., Masuda, Isao, Frenkel-Morgenstern, Milana, Hou, Ya-Ming

Journal:

Nature Communications

Year:

2015

Language:

english

File:

PDF, 1.20 MB

english, 2015

5

Methyl transfer by substrate signaling from a knotted protein fold

Christian, Thomas, Sakaguchi, Reiko, Perlinska, Agata P, Lahoud, Georges, Ito, Takuhiro, Taylor, Erika A, Yokoyama, Shigeyuki, Sulkowska, Joanna I, Hou, Ya-Ming

Journal:

Nature Structural and Molecular Biology

Year:

2016

Language:

english

File:

PDF, 3.40 MB

english, 2016

6

How to Untie a Protein Knot

Yin, Sitao, Dhital, Brittiny, Hou, Ya-Ming

Journal:

Year:

2019

File:

PDF, 660 KB

2019

7

Incorporation of Tellurocysteine into Glutathione Transferase Generates High Glutathione Peroxidase Efficiency

Xiaoman Liu, Louis A. Silks, Cuiping Liu, Morgane Ollivault-Shiflett, Xin Huang, Jing Li, Guimin Luo, Ya-Ming Hou, Junqiu Liu, Jiacong Shen

Journal:

Angewandte Chemie

Year:

2009

Language:

english

File:

PDF, 389 KB

english, 2009

8

Incorporation of Tellurocysteine into Glutathione Transferase Generates High Glutathione Peroxidase Efficiency

Xiaoman Liu, Louis A. Silks, Cuiping Liu, Morgane Ollivault-Shiflett, Xin Huang, Jing Li, Guimin Luo, Ya-Ming Hou, Junqiu Liu, Jiacong Shen

Journal:

Angewandte Chemie International Edition

Year:

2009

Language:

english

File:

PDF, 389 KB

english, 2009

9

Apoptotic regulation and tRNA

Yide Mei, Aaron Stonestrom, Ya-Ming Hou, Xiaolu Yang

Journal:

Year:

2010

Language:

english

File:

PDF, 175 KB

english, 2010

10

A strategy of tRNA recognition that includes determinants of RNA structure

Christian S. Hamann, Ya-Ming Hou

Journal:

Bioorganic & Medicinal Chemistry

Year:

1997

Language:

english

File:

PDF, 949 KB

english, 1997

11

A simple structural feature is a major determinant of the identity of a transfer RNA

Hou, Ya-Ming, Schimmel, Paul

Journal:

Year:

1988

File:

PDF, 1.53 MB

1988

12

Biosynthesis: A new (old) way of hijacking tRNA

Lahoud, Georges, Hou, Ya-Ming

Journal:

Nature Chemical Biology

Year:

2010

Language:

english

File:

PDF, 580 KB

english, 2010

13

Aminoacylation of tRNA with phosphoserine for synthesis of cysteinyl-tRNACys

Slater, Simon, Hou, Ya-Ming, Zhang, Chun-Mei, Liu, Cuiping

Journal:

Nature Structural and Molecular Biology

Year:

2008

Language:

english

File:

PDF, 957 KB

english, 2008

14

Rapid ribosomal translocation depends on the conserved 18-55 base pair in P-site transfer RNA

Pan, Dongli, Kirillov, Stanislav, Zhang, Chun-Mei, Hou, Ya-Ming, Cooperman, Barry S

Journal:

Nature Structural and Molecular Biology

Year:

2006

Language:

english

File:

PDF, 343 KB

english, 2006

15

Shape-selective RNA recognition by cysteinyl-tRNA synthetase

Hauenstein, Scott, Zhang, Chun-Mei, Hou, Ya-Ming, Perona, John J

Journal:

Nature Structural and Molecular Biology

Year:

2004

Language:

english

File:

PDF, 982 KB

english, 2004

16

A role for SUMO in nucleotide excision repair

Hannah R. Silver, Jared A. Nissley, Simon H. Reed, Ya-Ming Hou, Erica S. Johnson

Journal:

Year:

2011

Language:

english

File:

PDF, 1.62 MB

english, 2011

17

Stereochemical mechanisms of tRNA methyltransferases

Ya-Ming Hou, John J. Perona

Journal:

Year:

2010

Language:

english

File:

PDF, 380 KB

english, 2010

18

Transfer RNAs and pathogenicity islands

Journal:

Trends in Biochemical Sciences

Year:

1999

Language:

english

File:

PDF, 103 KB

english, 1999

19

Discriminating among the discriminator bases of tRNAs

Journal:

Chemistry & Biology

Year:

1997

Language:

english

File:

PDF, 302 KB

english, 1997

20

Probing a tRNA core that contributes to aminoacylation

Christian S Hamann, Ya-Ming Hou

Journal:

Journal of Molecular Biology

Year:

2000

Language:

english

File:

PDF, 406 KB

english, 2000

21

Influence of transfer RNA tertiary structure on aminoacylation efficiency by glutaminyl and cysteinyl-tRNA synthetases

Luke D Sherlin, Timothy L Bullock, Kate Juliet Newberry, Richard S.A Lipman, Ya-Ming Hou, Barbro Beijer, Brian S Sproat, John J Perona

Journal:

Journal of Molecular Biology

Year:

2000

Language:

english

File:

PDF, 1013 KB

english, 2000

22

Alternative design of a tRNA core for aminoacylation

Thomas Christian, Richard S.A Lipman, Caryn Evilia, Ya-Ming Hou

Journal:

Journal of Molecular Biology

Year:

2000

Language:

english

File:

PDF, 346 KB

english, 2000

23

Amino acid activation of a dual-specificity tRNA synthetase is independent of tRNA

Richard S.A Lipman, Penny J Beuning, Karin Musier-Forsyth, Ya-Ming Hou

Journal:

Journal of Molecular Biology

Year:

2002

Language:

english

File:

PDF, 157 KB

english, 2002

24

Prevention of mis-aminoacylation of a dual-specificity aminoacyl-tRNA synthetase

Richard S.A Lipman, Jinling Wang, Kevin R Sowers, Ya-Ming Hou

Journal:

Journal of Molecular Biology

Year:

2002

Language:

english

File:

PDF, 217 KB

english, 2002

25

Distinct Origins of tRNA(m1G37) Methyltransferase

Thomas Christian, Caryn Evilia, Sandra Williams, Ya-Ming Hou

Journal:

Journal of Molecular Biology

Year:

2004

Language:

english

File:

PDF, 1.48 MB

english, 2004

26

Breaking the Stereo Barrier of Amino Acid Attachment to tRNA by a Single Nucleotide

Svetlana Shitivelband, Ya-Ming Hou

Journal:

Journal of Molecular Biology

Year:

2005

Language:

english

File:

PDF, 329 KB

english, 2005

27

Distinct Kinetic Mechanisms of the Two Classes of Aminoacyl-tRNA Synthetases

Chun-Mei Zhang, John J. Perona, Kang Ryu, Christopher Francklyn, Ya-Ming Hou

Journal:

Journal of Molecular Biology

Year:

2006

Language:

english

File:

PDF, 578 KB

english, 2006

28

Kinetic Quality Control of Anticodon Recognition by a Eukaryotic Aminoacyl-tRNA Synthetase

Cuiping Liu, Howard Gamper, Svetlana Shtivelband, Scott Hauenstein, John J. Perona, Ya-Ming Hou

Journal:

Journal of Molecular Biology

Year:

2007

Language:

english

File:

PDF, 1.51 MB

english, 2007

29

Distinct Determinants of tRNA Recognition by the TrmD and Trm5 Methyl Transferases

Thomas Christian, Ya-Ming Hou

Journal:

Journal of Molecular Biology

Year:

2007

Language:

english

File:

PDF, 548 KB

english, 2007

30

Control of Catalytic Cycle by a Pair of Analogous tRNA Modification Enzymes

Thomas Christian, Georges Lahoud, Cuiping Liu, Ya-Ming Hou

Journal:

Journal of Molecular Biology

Year:

2010

Language:

english

File:

PDF, 2.09 MB

english, 2010

31

Pyrophosphorolysis of CCA Addition: Implication for Fidelity

Takao Igarashi, Cuiping Liu, Hironobu Morinaga, Sangbumn Kim, Ya-Ming Hou

Journal:

Journal of Molecular Biology

Year:

2011

Language:

english

File:

PDF, 1.58 MB

english, 2011

32

AlkB Restores the Biological Function of mRNA and tRNA Inactivated by Chemical Methylation

Rune Ougland, Chun-Mei Zhang, Aivar Liiv, Rune F. Johansen, Erling Seeberg, Ya-Ming Hou, Jaanus Remme, Pål Ø. Falnes

Journal:

Year:

2004

Language:

english

File:

PDF, 321 KB

english, 2004

33

Methods for kinetic and thermodynamic analysis of aminoacyl-tRNA synthetases

Christopher S. Francklyn, Eric A. First, John J. Perona, Ya-Ming Hou

Journal:

Year:

2008

Language:

english

File:

PDF, 1.00 MB

english, 2008

34

Recognition of tRNA Backbone for Aminoacylation with Cysteine: Evolution from Escherichia coli to Human

Xiaotian Ming, Kristina Smith, Hiroaki Suga, Ya-Ming Hou

Journal:

Journal of Molecular Biology

Year:

2002

Language:

english

File:

PDF, 706 KB

english, 2002

35

Zinc-mediated Amino Acid Discrimination in Cysteinyl-tRNA Synthetase

Chun-Mei Zhang, Thomas Christian, Kate J. Newberry, John J. Perona, Ya-Ming Hou

Journal:

Journal of Molecular Biology

Year:

2003

Language:

english

File:

PDF, 929 KB

english, 2003

36

Mutational Analysis of a Leucine Heptad Repeat Motif in a Class I Aminoacyl-tRNA Synthetase †

Ohannesian, David W., Oh, John, Hou, Ya-Ming

Journal:

Year:

1996

Language:

english

File:

PDF, 425 KB

english, 1996

37

Amino Acid Discrimination by a Highly Differentiated Metal Center of an Aminoacyl-tRNA Synthetase †

Zhang, Chun-Mei, Perona, John J., Hou, Ya-Ming

Journal:

Year:

2003

Language:

english

File:

PDF, 159 KB

english, 2003

38

Acquisition of an Insertion Peptide for Efficient Aminoacylation by a Halophile tRNA Synthetase †

Evilia, Caryn, Hou, Ya-Ming

Journal:

Year:

2006

Language:

english

File:

PDF, 796 KB

english, 2006

39

Misacylation and Editing by Escherichia coli Valyl-tRNA Synthetase: Evidence for Two tRNA Binding Sites †

Tardif, Keith D., Liu, Mingsong, Vitseva, Olga, Hou, Ya-Ming, Horowitz, Jack

Journal:

Year:

2001

Language:

english

File:

PDF, 107 KB

english, 2001

40

Evidence for Unfolding of the Single-Stranded GCCA 3‘-End of a tRNA on Its Aminoacyl-tRNA Synthetase from a Stacked Helical to a Foldback Conformation †

Madore, Eric, Lipman, Richard S. A., Hou, Ya-Ming, Lapointe, Jacques

Journal:

Year:

2000

Language:

english

File:

PDF, 600 KB

english, 2000

41

CCA addition to tRNA: Implications for tRNA quality control

Journal:

Year:

2010

Language:

english

File:

PDF, 664 KB

english, 2010

42

tRNA Integrity Is a Prerequisite for Rapid CCA Addition: Implication for Quality Control

Marcel Dupasquier, Sangbumn Kim, Konstantine Halkidis, Howard Gamper, Ya-Ming Hou

Journal:

Journal of Molecular Biology

Year:

2008

Language:

english

File:

PDF, 967 KB

english, 2008

43

Expression of the mouse metallothionein-I gene in Escherichia coli: Increased tolerance to heavy metals

Ya-Ming Hou, Rosalind Kim, Sung-Hou Kim

Journal:

Biochimica et Biophysica Acta (BBA) - Gene Structure and Expression

Year:

1988

Language:

english

File:

PDF, 368 KB

english, 1988

44

Genes adopt non-optimal codon usage to generate cell cycle-dependent oscillations in protein levels

Frenkel-Morgenstern, Milana, Danon, Tamar, Christian, Thomas, Igarashi, Takao, Cohen, Lydia, Hou, Ya-Ming, Jensen, Lars Juhl

Journal:

Molecular Systems Biology

Year:

2012

Language:

english

File:

PDF, 492 KB

english, 2012

45

Indirect Readout of tRNA for Aminoacylation †

Perona, John J., Hou, Ya-Ming

Journal:

Year:

2007

Language:

english

File:

PDF, 908 KB

english, 2007

46

Molecular dissection of a transfer RNA and the basis for its identity

Hou, Ya-Ming, Francklyn, Christopher, Schimmel, Paul

Journal:

Trends in Biochemical Sciences

Year:

1989

Language:

english

File:

PDF, 624 KB

english, 1989

47

Aminoacylation of tRNA in the Evolution of an Aminoacyl-tRNA Synthetase

Richard S. A. Lipman and Ya-Ming Hou

Journal:

Proceedings of the National Academy of Sciences

Year:

1998

Language:

english

File:

PDF, 1.13 MB

english, 1998

48

The selective tRNA aminoacylation mechanism based on a single G•U pair

Naganuma, Masahiro, Sekine, Shun-ichi, Chong, Yeeting Esther, Guo, Min, Yang, Xiang-Lei, Gamper, Howard, Hou, Ya-Ming, Schimmel, Paul, Yokoyama, Shigeyuki

Journal:

Year:

2014

Language:

english

File:

PDF, 10.14 MB

english, 2014

49

The tertiary structure of tRNA and the development of the genetic code

Journal:

Trends in Biochemical Sciences

Year:

1993

Language:

english

File:

PDF, 397 KB

english, 1993

50

Inhibition of tRNA Aminoacylation by 2‘- O -Methyl Oligonucleotides †

Hou, Ya-Ming, Gamper, Howard B.

Journal:

Year:

1996

Language:

english

File:

PDF, 425 KB

english, 1996